Entering edit mode
8.8 years ago
vahideh
▴
20
Hi!
I have a GEO file with .soft
format, how do I know that this file is one or two channel? can I read SOFT files with read.maimages
or ReadAffy
functions? The SOFT file structure is confusing me!
Thank you!
Thanks Davis!
I already work with GEOquery, but however, I don't handle it!
What problems did you have?
I downloaded several GSE files with SOFT format by GEOquery package, then I must implement QC on them. since, As I understood, Quality Control performed differentially between Affymetrix, Agilent and Illumina arrays, so I need to know that I work with which array, and how I Implemented QC on it!