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9.2 years ago
midox
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290
how to know the mapping rate from .sam file generated by a mapper?
do I use
samtools flagstat file.sam
Can you help me?
Thanks
how to know the mapping rate from .sam file generated by a mapper?
do I use
samtools flagstat file.sam
Can you help me?
Thanks
See this post: Number of mapped reads from BAM file
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I haven't a paired reads. I have a long reads not paired short. How can I find the number of mapped reads or the rate?
samtools flagstat
is a good solution?thanks