GC content of Refseq gene

Question

[BIOTIN]

Hi,

Is there any software/R package can retrieve GC content of Refseq gene?

Thank you

Answer 1

[Sukhi Singh]

Repitools has a function for calculating gcContent called as gcContentCalc

Minimal example from the package.

require(BSgenome.Hsapiens.UCSC.hg18)
TSSTable <- data.frame(chr = paste("chr", c(1,2), sep = ""), position = c(100000, 200000))
gcContentCalc(TSSTable, 200, organism=Hsapiens)

[BIOTIN]

Thank you,appreciate that!