I am new to TCGA. Can we download DNA microarray data from TCGA? I mean the DNA microarray data not the RNA-seq count data. Thanks.
I am new to TCGA. Can we download DNA microarray data from TCGA? I mean the DNA microarray data not the RNA-seq count data. Thanks.
The TCGA data are available here: https://tcga-data.nci.nih.gov/
Each project has potentially different platforms for microarrays (and some no microarrays at all).
Hi
I am working with CODA gene expretion data from TCGA and I want CEL formt file but each zip file have text format and I dont know compatable with R or not !
tnx
Please see the link that I posted as an answer to this question. If you follow a couple of links, you'll end up here: https://tcga-data.nci.nih.gov/tcga/dataAccessMatrix.htm
Choose the 133A array type under platform. Choose Level 1 data. Then, submit. That will allow you to create an archive with all the hgu-133a array data available.
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How can I understand if a project has a platform for microarrays? I'm new to TCGA and microarray too and I need to find DNA microarray dataset for colorectal cancer.
Thanks :)