HM450k probes portrayed on chromosomes

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8.9 years ago

floris.barthel ▴ 50

Hi,

I'm looking for a figure that portrays the position of HM450k probes across on top of chromosomes. Anyone know where I can find something like this?

Floris

human methylation 450k methylation DNA methylation • 1.9k views

ADD COMMENT • link updated 8.9 years ago by easelpeasel ▴ 10 • written 8.9 years ago by floris.barthel ▴ 50

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Hi,

do you mean an ideogram? Similar to some examples on this website?

http://visualization.ritchielab.psu.edu/phenograms/examples

cheers,

Stephan

ADD REPLY • link 8.9 years ago by easelpeasel ▴ 10

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Thanks, this is what I was looking for

ADD REPLY • link 8.8 years ago by floris.barthel ▴ 50

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Have you thought about just making one? You can download the probe annotations, convert them to a BED file and load that into IGV, which can save images.

ADD REPLY • link 8.9 years ago by Devon Ryan 104k

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You don't want to plot all 450000 positions in a single figure, do you?

ADD REPLY • link updated 4.9 years ago by Ram 44k • written 8.9 years ago by dario.garvan ▴ 520

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