Encoding zero-length features in BED format
1
0
Entering edit mode
8.8 years ago

What is the convention for encoding zero-length features (that is, features between two nucleotides) in BED format? Would I use [0, 0) or [1, 1) to describe the site between the 0th base and 1st base?

bed • 2.1k views
ADD COMMENT
4
Entering edit mode
8.8 years ago

1,1 is the space between the 0th and 1st base in zero-based coordinates

0   1   2   3   4  zero-based coords
  A   C   T   G    bases
  1   2   3   4    one-based coords
ADD COMMENT

Login before adding your answer.

Traffic: 2552 users visited in the last hour
Help About
FAQ
Access RSS
API
Stats

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.

Powered by the version 2.3.6