convert plink to weka

Question

[marwa.cs91]

Hello all,

I have 2 plink datasets (training & validation) datasets, format (.map , .ped), I want to convert plink dataset into weka arff files. So I used this python code but I have an error

https://github.com/DanWilliamsAu/plink2weka/blob/master/plink2weka.py

Error: assert (len(outline)= len(features))
Assertion Error

Could you help me?

Thanks in advance

Answer 1

[kh.elaish]

This tool converts ped files to arff format.

• http://mlkd.csd.auth.gr/bio/tres/downloads.html
• http://mlkd.csd.auth.gr/bio/tres/download/TRESUserGuide_v1.0.pdf

Good luck.

[marwa.cs91]

Good links

Thank you