Entering edit mode
8.8 years ago
arsala521
▴
50
Hello
I am trying to convert TCGA MAF file to VCF using maf2vcf.pl
The MAF file with build GRCh37-lite was not converted to VCF when I used reference genome GRCh37. The error was reference genome chosen is not correct
.
When I downloaded GRCh37-lite from this link and used it, again there was the same error that reference genome chosen is not correct
.
Can someone please tell how to convert TCGA MAF file with build GRCh37-lite to VCF?