Where/how can I download all coding sequences ( CDS ) of human genome?

Question

[jamesxli2007]

As the title says, I would like to download all known CDS sequences of human genome with transcript id and exon compositions to my desktop computer for analysis. I tried to get it from BioMart on ensembl.org, it worked for small queries, but my query to load all data always times out.

Thanks

James

[anp375]

Over here

If you know perl, and use Linux,this will help as well.

They don't have transcript IDs but they have the gene ids, gene names, genome accession number, and coding sequence positions. Don't think they keep the UTRs. There's a unique CCDS id for each.

Answer 1

[cbio]

You can find this pretty easily on the UCSC Table Browser.