Question

How To Use Rsem With Soapdenovo-Trans

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12.6 years ago

Rm 8.3k

I am new to use Rsem; does any one attempted using RSEM for SOAPdenovo-Trans contigs/scaffolds for differential expression of transcripts from genome without reference?.
How to integrate them?

I am trying trinity ...but it is taking for ever....

trinity rna-seq • 3.0k views

ADD COMMENT • link updated 8.8 years ago by kanika.151 ▴ 160 • written 12.6 years ago by Rm 8.3k

score 0 · Answer 1 · 2016-02-23

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Entering edit mode

8.8 years ago

kanika.151 ▴ 160

How about Salmon and Kallisto?

ADD COMMENT • link 8.8 years ago by kanika.151 ▴ 160