How can I download from the 1000 genome information for a list of SNPs in specific populations?

Question

[Simo]

Hi All,

I have a list of rs codes and positions from a Microarray and I need to get the same positions in different populations from the 1000 genome.

I tried with the 1000 genome Browser, but I should give a range for each chromosome and they are too big.

How can I do it in a different way?

Thank you

Answer 1

[jimmy_zeng]

You can just download all of the mutations recording in the files from office website: http://www.1000genomes.org/data

ftp://ftp.1000genomes.ebi.ac.uk/vol1/ftp/release/20130502/

Then you can write a simple script to do the batch search according to the positions.