rna seq analysis

Question

[kartikayprasad]

I am a master student . I am doing my project in my university.

I am using CLC to analyse the genome to find the novel genes and splice variants. I have genome on which annotations are transferred.

i have to find those regions which are excluding those annotation regions.

Is there any script or any another way that I can get these region along with there coordinates in a different file.

Thanks in advance

Answer 1

[andrew.j.skelton73]

This may sound harsh, but if you're working with CLC software then it's probably best that you contact their support, because

1. your institution is paying a lot for a licence, and
2. they'll know their software.

There are open source tools available that this community is far more likely to give you advice on, if you choose to go down that path.