XHMM on whole genome sequencing data

Question

[wanabi]

Hello,

Has anyone used XHMM for CNV detection in whole-genome sequencing data? I am planning to do this using a dummy capture kit containing all human exons. Is this reasonable?

Thans

[Leandro Lima]

XHMM is supposed to be used in exome data, because the calls are based on the average coverage of each exon.