WINDOWS command line tool for sequence assembly

Tool:WINDOWS command line tool for sequence assembly

3

Entering edit mode

8.7 years ago

BioApps ▴ 800

My company just released an update to a less know program called "DNA Baser Sequence Assembler Console" which is a "DOS" console tool. I know that most people on this forum are Linux-oriented, but I think this tool worth being brought to light just to show that bioinformatics can be done also on Windows.

I think it may be the only one for Windows :) At least Google could not find a second one.

So, take a look:

What can it do?

import Sanger samples (abi, scf, fasta, seq, txt, gbk) in the specified folder
automatically trim low quality ends
remove recognition sequences
assemble (also to reference)
correct the ambiguities in contig
save the log and the contig to disk

v1.3 - 2 match 2016
Download
Ready to pipe?

:)

windows sequence-assembly • 3.5k views

ADD COMMENT • link updated 17 months ago by Ram 44k • written 8.7 years ago by BioApps ▴ 800

3

Entering edit mode

You need to clarify that this tool is for conventional Sanger sequencing data.

Otherwise you are going to make a lot of windows users unhappy :-)

ADD REPLY • link 8.7 years ago by GenoMax 147k

0

Entering edit mode

You are right. Done: "import Sanger samples (abi, scf, fasta, seq, txt, gbk) in the specified folder"

ADD REPLY • link 8.7 years ago by BioApps ▴ 800

Login before adding your answer.