Problem compiling DiscoSNP

Question

[BioinfoNovice]

Hi,

I want to use DiscoSNP to detect snp from raw reads.

I download and uncompress DiscoSNP in my ~/home/"my username". However, when I tried to compile, nothing happened and there was a message Unmatch `. I followed the manual thoroughly (which did not provide much details) and I don't understand why this is happening.

I'm not installing it on my computer but on a computing cluster where I'm a user. Is the problem du to this?

I would really appreciate any help.

Thank you very much in advance.

Answer 1

[pierre.peterlongo]

Hi,

Sorry for the inconvenience. You don't need to be root to install discoSnp, the problem comes from something else. I never met the "Unmatch" problem.

Do you have cmake installed on the cluster?

What is your c++ compiler version?

Would you mind sending me exactly the commands you typed and the messages you obtained?

Pierre

[BioinfoNovice]

HI Pierre,

Thank you very much for your attention. Finally, I was able to install discoSnp in the cluster where I work. I asked someone at my lab who know wells linux. I don't know exactly how he did but I'm now able to run discoSNP.

Regards,
Noppol.