Is there a GTEX trans-eQTL analysis?
1
0
Entering edit mode
8.8 years ago
Milos Pjanic ▴ 30

Has anyone done a trans-eQTL analysis using data from GTEX? Would it be feasible due to relatively lower sample numbers in GTEX compared to what is required for trans-eQTL data analysis? Thanks

RNA-Seq eQTL trans-eQTL • 2.7k views
ADD COMMENT
3
Entering edit mode
8.8 years ago

Cis EQTL analysis is feasible with GTEX data-sets (I've performed it successfully with approximately 237 donors).

Trans-EQTL requires much larger sample sizes and lower p-values to classify significant EQTL's. I doubt it would be feasible.

ADD COMMENT

Login before adding your answer.

Traffic: 2213 users visited in the last hour
Help About
FAQ
Access RSS
API
Stats

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.

Powered by the version 2.3.6