Entering edit mode
8.8 years ago
k.kathirvel93
▴
310
Dear all, If you are PGAP user help me, I have started to do Pangenome analysis with help of PGAP on my 5 strains from same species with one reference genome (PA01). Here, my doubt is, how can I compare my all 5 strains against reference genome. Thanks in advance.
Command Line : perl PGAP.pl -strains 2808+25832+28923+36155+38529 -input ../check/ -output ../result/ --cluster --pangenome --variation --evolution --function -method MP
In the command line -strains 2808+25832+28923+36155+38529 are my strains......Where should I mention my Reference genome in the command line??????????
