Running Multiple Alignments in MEGA with a script produces errors.
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8.8 years ago

I need to run about 100 fasta files through MEGA v7 for multiple alignments. I have tried writing scripts and using command line (in both Linux and Windows) to run alignments using the .mao settings file, but each time after completion, MEGA throws an error, saying there is an invalid character "_" in some line of the file. However, alignments run fine with the Windows GUI version. Does anyone know how to get around this error?

next-gen RNA-Seq MEGA multiple-alignment • 2.7k views
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