chromosomal cordinates of a list of genes

Question

[bioguy24]

Can a list of genes (134) be submitted to ucsc genome browser and the chromosomal cordinates in hg19 be returned for each gene in the list or is there a better way? Thank you :).

[romain.lannes]

you can use biomart from ensembl being carefull of genome selection here the link for hg19 http://grch37.ensembl.org/biomart/martview/8870bd61f1b936f0eaa6e843a4fe1def

it is a friendly interface.

[GenoMax]

Via Table browser, likely. Have you checked in hg19 GTF file first?

[venu]

This is exactly what you are looking for.

Answer 1

[Sukhi Singh]

Use Biomart for that, quick and a multitude of options. Check the tutorial out.

Answer 2

[Ram]

Use the UCSC Table Browser or their MySQL interface. It will be easier, faster and reproducible and pliable to scale-up.

Answer 3

[Giovanni M Dall'Olio]

This has already been answered many times. Have a look at the Homo.sapiens package in bioconductor, then use the genes() on the TxDb object.