Kaplan Meier Hazard Ratio

Question

[Apricimo]

I need to find the highest hazard ratio for a particular cancer for a particular gene.

For example, I want to find out which gene in the human genome corresponds to the poorest clinical outcome for lung cancer.

I've used cBioportal but using this databse I need to enter a specific gene and then I can see the Kaplan Meier plot from which I can see what the hazard ratio is. I don't want to sit here and enter gene names then look through them one by one. Rather how do I filter so that I am able to see only the highest hazard ratios and pick out those genes.

Is there a database for this or how could I find out this information?

Answer 1

[asalimih]

You can use TCGABiolinks package for this purpose. here is a good article about it link