Entering edit mode
8.8 years ago
auryndb
▴
70
How can I see if my gene is expressed in mouse ESC using available RNA-seq data? IS there any website that I can simply put the name of my gene down and get a results if it is expressed or not. ( I know about ENCODE, or ESCAPE) but I have not been able to find how to do this in their websites.
I did that. But how can I know if my gene is there or not?
http://genome.ucsc.edu/cgi-bin/hgTracks?db=mm9&lastVirtModeType=default&lastVirtModeExtraState=&virtModeType=default&virtMode=0&nonVirtPosition=&position=chr11%3A77851443%2D77873934&hgsid=481968789_9OTOvrJx9kSJKlFmtsByHNaDvoxp
After clicking on ES-Bruce 4 (the E14 tracks are not working for some reason), there are four tracks available.
Leave the first two boxes unchecked. These are showing you actual alignments. Select tracks 3 and 4.
This will show you the RNA seq signal in blue tracks like this: