Getting Nucleotide Counts Of A Fasta File In Cistrome/Galaxy

Question

[Will]

I'm new to cistrome/galaxy and I was wondering if there was a way to get the nucleotide frequency counts from a fasta file.

Thanks,

Will

Answer 1

[Dan D]

If you have the FASTX toolkit installed (wrappers are available for Galaxy), you can simply use the Nucleotide Distribution Chart tool.

I'll be happy to provide more details if that doesn't cover it.