How many loci can expect from cufflinks output
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8.7 years ago
Eva_Maria ▴ 190

Hai every one

I did a transcriptome assembly with tophat and followed by cufflinks for Pseudomonas aeruginosa. After processing gtf file got 38 loci, Is it a good number? How many loci can expect from cufflinks output for bacterial species?

genome RNA-Seq sequencing tophat • 1.5k views
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Really, I don't know, but these guys in this paper are seeing around 3000 TSS

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