Is there a database that would answer this type of query:
Given an rs ID of a SNP, which commercial SNP chips is this SNP on?
I found this one, the SNAP database at the Broad:
https://www.broadinstitute.org/mpg/snap/ldsearch.php
which answers the question if the query SNP is in HapMap3 or 1000 Genomes Pilot 1, but our query SNP was not in either, so I’m not 100% certain this web site is doing the search I want it to do.
I suppose I could do it by downloading and searching all of these files
http://www.well.ox.ac.uk/~wrayner/strand/
but that is slow and cumbersome.
Seems like this is a particular type of annotation that should be available in at least one annotation database somewhere.
Thank you.