gene list -interactions

Question

[priyasethu18]

hello all! I have only the set of up regulated (1526)and down regulated (1950) gene list of bladder cancer in excel. I want to see the interaction between these genes, Is there any tool or software to do this?

Answer 1

[Zhilong Jia]

String can output the interactions based on your input.

Answer 2

[Shamim Sarhadi]

Dear priyasethu18, you could use netanalyst

It has various options for statistical analysis and finding functional module in your gene list, also you could attribute a weight for each gene in your network

Best

Answer 3

[priyasethu18]

Thank you! i tried using STRING , since my gene list is large the , output is taking long to display.