Aa Sequence From The Human Proteins Track
0
0
Entering edit mode
12.7 years ago
Klugman ▴ 20

hi,

I am very new to bioinformatics, so I hope my question is not too silly.

I am currently examining a newly sequenced genome deposited to UCSC (myoLuc2/microbat) and want to obtain the amino acid sequences from the Human Proteins Track. When I use the Genome Browser, I can click on the track and retrieve the AA/peptide sequence of interest (e.g. http://tinyurl.com/NM-152536-myoLuc2 ), however I am at a loss as to how I retrieve every single AA/peptide sequence using the TableBrowser. When I select the “Human Proteins Track” as input and “sequence” as the output format, I obtain the mRNA sequences and not the desired AA sequence. What am I doing wrong here?

Note that attempting to obtain the microbat vs human CDS via the human Table Browser appears to only retrieve myoLuc1 (an "earlier" genome at 1.7X).

all the best, J.

ucsc browser • 2.1k views
ADD COMMENT

Login before adding your answer.

Traffic: 1744 users visited in the last hour
Help About
FAQ
Access RSS
API
Stats

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.

Powered by the version 2.3.6