Mafft alignment hat2 error

Question

[chippy8899]

Hi all, I ran a mafft job to align a single reference sequence to DNA alignment ( 115628 sequences). The job ran and crashed with an error: "Loading 'hat2n' (aligned sequences - new sequences) ... 115628 != 11562 hat2 is wrong."

I am not sure what this means. Can somebody help!! Many thanks,

Answer 1

[natasha.sernova]

See this post.

Mafft Output Distance Matrix