I am trying to use ChIP-Seq data from GEO that has been posted in tdf format. I want to convert it to tdf format with chromosome, start and stop coordinates as well as signal intensity. How do I do it? A previous post talked about converting it from tdf to bedgraph and from bedgraph to bed but the fourth column with the signal intensity was missing in the bed file.
Thanks! Anwesha Ghosh Postdoctoral Associate SBP Medical Discovery Institute
Can you tell me where is the document about tdftobedgraph? I just installed igvtools but tdftobedgraph is not listed as one of the commands when I tried igvtools help. Thanks.
Any chance you know how to get the headers on this?