contrast matrix in R
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8.6 years ago
786 ▴ 50

Please find out the error in this command....

groups = paste(pData(phenoData(gse21340dat[[1]]))$characteristics_ch1.1,pData(phenoData(gse2134 0dat[[1]]))$characteristics_ch1.2, sep=".")

when I run it i got this error

Error: unexpected numeric constant in "groups = paste(pData(phenoData(gse21340dat[[1]]))$characteristics_ch1.1,pData(phenoData(gse2134 0"
r limma • 1.6k views
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I would imagine it's either the random .1 or the space in gse2134 0.

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thanx alot it actually removed the error there was space thank u so much

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There might be some unexpected space in the data, in this case some where values are not separated by '.'

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