Accessible surface area or amino acids
0
1
Entering edit mode
8.6 years ago
e.gabor90 ▴ 10

I would be interested in the Accessible surface area of an amino acid. Currently I am predicting ASA with SPIDER2 (http://www.nature.com/articles/srep11476) and to count relative ASA I use the values found on wikipedia (https://en.wikipedia.org/wiki/Relative_accessible_surface_area) However these seems kinda wrong, because the relative ASA is 60% at max even at C or N termini.

Any suggestions?

ASA Amino-acid • 2.5k views
ADD COMMENT
0
Entering edit mode

I have same problem with biojava (Java library for bioinformatics). The relative accessible surface of some residues is more than 1.

ADD REPLY

Login before adding your answer.

Traffic: 1554 users visited in the last hour
Help About
FAQ
Access RSS
API
Stats

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.

Powered by the version 2.3.6