Question

Forum:List of cloud genomics companies

51

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11.0 years ago

14134125465346445 ★ 3.6k

IntelliSpace Genomics -- http://www.usa.philips.com/healthcare/medical-specialties/genomics from Philips Healthcare
DNAnexus -- http://dnanexus.com
BaseSpace -- http://basespace.illumina.com
Seven Bridges Genomics -- http://www.sbgenomics.com (merged with Pierian, UgenTec into Velsera)
Pine Biotech -- http://pine-biotech.com/
GenoSpace -- http://www.genospace.com
Cypher Genomics -- http://www.cyphergenomics.com (acquired by Human Longevity)
Syapse -- http://syapse.com (EHRs with some precision medicine)
Globus Genomics -- http://www.globus.org
Genestack -- http://www.genestack.com
Eagle Genomics -- http://www.eaglegenomics.com
Geospiza PerkinElmer -- http://www.geospiza.com (rolled into Revvity)
Ion Torrent's Ion Reporter -- http://www.lifetechnologies.com/ionreporter
Gen3 Data Commons -- https://gen3.org
Seqera Labs -- https://www.seqera.io
Watershed Informatics -- http://www.watershed.ai
Almaden - https://almaden.io/
Goodwright - https://goodwright.com/
BatchX - https://www.batchx.io/
DNAStack Omics AI - https://omics.ai/
DeepOrigin - https://www.deeporigin.com/platform
EPAM - https://lifescience.opensource.epam.com/index.html
Scidap - https://scidap.com
Metabolon - https://www.metabolon.com/
Potato - http://readysetpotato.com/
Terra - https://terra.bio/
Solu - https://solu.bio/
Saphetor Varsome - https://saphetor.com/
Mantle Bio - https://mantlebio.com/
Rosalind - https://www.rosalind.bio/

~~Curoverse http://curoverse.com/~~ (bought by Veritas)
~~InsideDNA http://insidedna.me/~~
~~BGI EasyGenomics -- http://www.easygenomics.com~~
~~Omicia Fabric Genomics -- http://www.omicia.com~~
~~Ayasdi -- http://www.ayasdi.com~~
~~Genome Cloud -- http://www.genome-cloud.com~~
~~Knome~~ ~~Tute Genomics~~ ~~PierianDx~~ -- http://www.velsera.com
~~Maverixbio -- http://www.maverixbio.com~~
~~BioDatomics -- http://www.biodatomics.com/~~
~~Era7 -- http://era7.com~~
~~Station X -- http://www.stationxinc.com~~
~~Desktop Genetics -- http://www.deskgen.com/~~
~~Spiral Genetics -- http://www.spiralgenetics.com~~
~~XGencloud -- http://www.xgencloud.com~~
~~Truwl -- https://truwl.com~~

cloud-genomics • 32k views

ADD COMMENT • link updated 4 weeks ago by Jeremy Leipzig 22k • written 11.0 years ago by 14134125465346445 ★ 3.6k

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If you could make links - hyperlink, you would save a lot of precious seconds...

ADD REPLY • link 11.0 years ago by zx8754 12k

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StirPlate.io isn't on the list, yet.

ADD REPLY • link 9.3 years ago by Tom Koch ▴ 110

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StirPlate is dead...

ADD REPLY • link 5.4 years ago by Jeremy Leipzig 22k

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neat listing, I am going to make it sticky so it stays on top of the forum, the author and moderators can update with other links that people may add

ADD REPLY • link updated 11.0 years ago by Devon Ryan 104k • written 11.0 years ago by Istvan Albert 101k

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Could you also separate them based on location?

ADD REPLY • link 11.0 years ago by Venky ▴ 20

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all of them are up in the clouds ;-)

ADD REPLY • link 11.0 years ago by Istvan Albert 101k

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My first thought, as well. :-) I think this comment stems from the fact that some links go to non-English sites. It may also be helpful to try and organize them by the services. For example, personal genomics, data analysis, data storage, etc.

ADD REPLY • link 11.0 years ago by SES 8.6k

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especially the dead ones...

ADD REPLY • link 5.4 years ago by Jeremy Leipzig 22k

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Appistry seems to have NGS pipelines and a "Private Cloud", but I am not sure if that qualifies as true "Cloud Genomics". Anyone's got more information? http://www.appistry.com/products/ngs-pipelines/bioinformatics-pipeline-suite‎

ADD REPLY • link 11.0 years ago by 14134125465346445 ★ 3.6k

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Appistry is dead....

ADD REPLY • link 5.4 years ago by Jeremy Leipzig 22k

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http://gxgenomics.com/#/

ADD REPLY • link 8.6 years ago by gxgenomics ▴ 30

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gxgenomics is dead...

ADD REPLY • link 5.4 years ago by Jeremy Leipzig 22k

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(this domain is available)

ADD REPLY • link 9 months ago by Jeremy Leipzig 22k

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Is this url going to be static-enough that I can cite it? Or could we get a doi somehow?

ADD REPLY • link 10.5 years ago by Yannick Wurm ★ 2.5k

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yes the URL will be stable and have been stable even across the rewrite

ADD REPLY • link 10.5 years ago by Istvan Albert 101k

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super - thanks @istvan

ADD REPLY • link 10.5 years ago by Yannick Wurm ★ 2.5k

score 6 · Answer 1 · 2015-01-15

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9.9 years ago

peter.amstutz ▴ 300

Curoverse http://curoverse.com provides Platform as a Service (PaaS), development and support for the free software Arvados platform.

ADD COMMENT • link 9.9 years ago by peter.amstutz ▴ 300

score 3 · Answer 2 · 2013-11-14

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11.0 years ago

gourneau ▴ 260

Ion Torrent's Ion Reporter - https://www.lifetechnologies.com/ionreporter

ADD COMMENT • link 11.0 years ago by gourneau ▴ 260

score 2 · Answer 3 · 2013-11-14

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11.0 years ago

Chris Whelan ▴ 570

A new one I think is:

BioDatomics -- http://www.biodatomics.com/

ADD COMMENT • link 11.0 years ago by Chris Whelan ▴ 570

score 1 · Answer 4 · 2013-12-12

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11.0 years ago

alexej.knaus ▴ 130

GeneTalk - www.gene-talk.de (not cloud, but genomics company)

ADD COMMENT • link 11.0 years ago by alexej.knaus ▴ 130

score 1 · Answer 5 · 2015-01-22

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9.8 years ago

Mikael Huss 4.8k

SolveBio and OneCodex can definitely be considered cloud genomics companies, but Ayasdi (which is listed above) seems to me much more general-purpose than that. They are very interesting but their product is not specifically "cloud" or "genomics". Even Google has a specific genomics cloud API :)

ADD COMMENT • link 9.8 years ago by Mikael Huss 4.8k

score 1 · Answer 6 · 2015-10-04

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9.1 years ago

vladimir.khramkov ▴ 10

SequenceBase is a leader in providing patent sequence information to the biotechnology, legal, pharmaceutical, scientific, technical and academic bioinformatics communities.

ADD COMMENT • link 9.1 years ago by vladimir.khramkov ▴ 10

score 1 · Answer 7 · 2015-11-20

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9.0 years ago

Jeremy Leipzig 22k

WuXI NextCODE (now called Genuity Science genuitysci.com)

~~VIA Genetics http://www.viagenetics.com/~~

ADD COMMENT • link 7 months ago by Jeremy Leipzig 22k

score 1 · Answer 8 · 2016-02-17

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8.8 years ago

hiranjith.gh ▴ 10

OncoMD Cancer Analytics Platform from MedGenome: http://medgenome.com/commercial/OncoMD/

ADD COMMENT • link 8.8 years ago by hiranjith.gh ▴ 10

score 1 · Answer 9 · 2016-03-29

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8.7 years ago

steven.vanvooren ▴ 10

www.cartagenia.com - part of Agilent Technologies.

ADD COMMENT • link 8.7 years ago by steven.vanvooren ▴ 10

Jeremy Leipzig · Answer 10 · 2016-04-14

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8.6 years ago

gxgenomics ▴ 30

~~Gx Genomics cloud hub http://gxgenomics.com~~ DEAD!

ADD COMMENT • link updated 3.2 years ago by Jeremy Leipzig 22k • written 8.6 years ago by gxgenomics ▴ 30

score 1 · Answer 11 · 2016-04-22

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8.6 years ago

Keith Callenberg ▴ 960

PierianDx offers end-to-end cloud-based analysis as well as just annotation/interpretation: http://pieriandx.com/technology/

ADD COMMENT • link 8.6 years ago by Keith Callenberg ▴ 960

score 1 · Answer 12 · 2018-07-03

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6.4 years ago

apaytuvi ▴ 40

Sequentia Biotech, which currently has the following online platforms for analyzing metagenomics and transcriptomics data:

Gaia: https://metagenomics.sequentiabiotech.com/

AIR: https://transcriptomics.sequentiabiotech.com/

ADD COMMENT • link 6.4 years ago by apaytuvi ▴ 40

score 1 · Answer 13 · 2023-03-22

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20 months ago

Simon ▴ 40

Basepair is a point & click way of analyzing and visualizing a variety of genetic, transcriptomic and epigenetic NGS data types.

ADD COMMENT • link 20 months ago by Simon ▴ 40

score 0 · Answer 14 · 2016-03-06

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8.7 years ago

LOH • 0

Combining cloud based genomics (Discovery) and bench work (Validation): http://www.quickbiology.com

ADD COMMENT • link 8.7 years ago by LOH • 0

score 0 · Answer 15 · 2016-04-22

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8.6 years ago

moranr ▴ 290

NSilico - http://www.nsilico.com/

ADD COMMENT • link 8.6 years ago by moranr ▴ 290

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this one is dead

ADD REPLY • link 9 months ago by Jeremy Leipzig 22k

score 0 · Answer 16 · 2016-06-16

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8.4 years ago

shane.neeley ▴ 50

www.MolecularMatch.com

ADD COMMENT • link 8.4 years ago by shane.neeley ▴ 50

score 0 · Answer 17 · 2016-06-28

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8.4 years ago

kerry_winslet • 0

CD-Genomics - http://www.cd-genomics.com/

ADD COMMENT • link 8.4 years ago by kerry_winslet • 0

score 0 · Answer 18 · 2017-09-07

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7.2 years ago

bridget.a.mcmahon ▴ 20

Databiology - databiology

ADD COMMENT • link 7.2 years ago by bridget.a.mcmahon ▴ 20

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we arrived too late

ADD REPLY • link 9 months ago by Jeremy Leipzig 22k

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oops that's a pity!

ADD REPLY • link 8 months ago by SequenceServer ▴ 140

score 0 · Answer 19 · 2020-12-18

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3.9 years ago

thezgabby • 0

BioBox Analytics - biobox.io

ADD COMMENT • link 3.9 years ago by thezgabby • 0

score 0 · Answer 20 · 2022-10-21

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2.1 years ago

Jim • 0

Pluto Bio - https://pluto.bio

ADD COMMENT • link 2.0 years ago by Jim • 0

score 0 · Answer 21 · 2023-05-08

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18 months ago

SequenceServer ▴ 140

Pragmatic Genomics runs SequenceServer Cloud BLAST :-)

ADD COMMENT • link 18 months ago by SequenceServer ▴ 140