Joining multiple paired end-reads in qiime
0
1
Entering edit mode
8.6 years ago
espop23 ▴ 60

Hello,

I am trying to join multiple paired end-reads in qiime. Essentially, I have a folder called teaser that has all my forward and end reads, which all start with sample and then have numbered identifiers. I have used the following code:

$ multiple_join_paired_ends.py -i teaser/sample -o joined*

But get errors: ValueError: Invalid filename found for splitting on input for file

Is there something I have to add to my script in the terminal to make it work?

Thank you!

qiime paired sequence • 3.1k views
ADD COMMENT
1
Entering edit mode

multiple_join_paired_ends.py -i teaser/ -o joined

Not sure, why you've sample in teaser

I'm assuming joined output folder exists. If not, create it, and try.

ADD REPLY

Login before adding your answer.

Traffic: 1991 users visited in the last hour
Help About
FAQ
Access RSS
API
Stats

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.

Powered by the version 2.3.6