Entering edit mode
8.6 years ago
kon.klaourakis
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0
Hello,
I have created a workflow for ChIP-Seq, yesterday everything worked fine and I was able to view the FastQC webpage. Today I have encountered some problems:
1) I tried to run in the same workflow another set of ChIP-Seq data, however the process stopped after Trimmomatic at Bowtie: This is a new dataset and not all of its data are available yet. Moreover there are no indications for an error.
2) No FastQC webpage can be viewed, nor from this run, or from the previous run that yesterday I could view normally.
Is there a problem with Galaxy? What should I do?
Thank you very much for any suggestion!
Konstantinos Klaourakis
Looks like you have already posted this question at Galaxy biostars: https://biostar.usegalaxy.org/p/17182/
Hopefully this is a temporary glitch at PSU Galaxy.
What happens if you "Resume paused jobs" from the history menu (click on the little gear on the upper right side of the screen)?
It gives me the message "Passed jobes have resumed", but other than that nothing. It is like it has "lagged" (if I can say something like that). And it seams that has happend to another person: iraia.maialen
Hi! The same is happening to me in this 2-3 last days, my work is almost stopped because the Galaxy options don't work properly! Today I have not been able to view the FastQC webpages of my last analysis, and also I have not been able to run Bowtie for a chipseq analysis or Cuffmerge for a RNAseq analysis. Since wednesday it was given me a lot of errors but today it is like stopped, with an exclamation symbol in the beginning of the work. Do someone know when will be this problem solved? Thanks!
Weird. The PSU Galaxy folks are usually pretty quick to fix stuff like this. Perhaps a bunch are away at conferences.