Metabolic network database

Question

[Na Sed]

As you know BioGrid is a database that contains the information of relations between genes, i.e. network of genes. Now, I was wondering if we have such database for metabolite data. I appreciate if you would help me. Indeed, I want to make a network between metabolites and I do not know any database that I can use.

Answer 1

[natasha.sernova]

I hope this will help you:

It's a paper-summary from 2015:

http://bmcbioinformatics.biomedcentral.com/articles/10.1186/s12859-015-0462-y

A list of different databases:

http://metabolomicssociety.org/resources/metabolomics-databases

A shorter list of databases:

https://en.wikipedia.org/wiki/List_of_biological_databases#Metabolic_pathway_and_Protein_Function_databases

You are not the first person who was going to create such a database, some people shared their views on the topic:

https://en.wikipedia.org/wiki/Metabolic_network_modelling

Answer 2

[ivivek_ngs]

You can take a look at ipath2 , reactome and consensuspathdb, they should be having metabolic pathways for gene-gene relationships to consequent pathways. Even IPA has it but you need a commercial license for IPA.

Answer 3

[Egon Willighagen]

WikiPathways is an extensive pathway database which also contains many metabolic pathways.