where can i find chromosomes dataset for individuals ?

Question

[ahm3dhany]

i downloaded the reference chromosomes (1 to 22, X & Y) but i wonder where can i find chromosomes dataset for individuals ?

[natasha.sernova]

See these old posts. I hope they may help you.

Where Can I Get Whole Human Genomes?

Sources Of Publicly Available Human Whole Genome Sequence Data

Another way to find data:

Human Genome Files

This is also useful for training, teaching, etc.

Human NGS Cancer Data for tool development, algorithm benchmarking, teaching, pipeline evaluation, etc.

This is useful post about limitations:

Human Genome Reference characteristics

Probably this is all that is available in UCSC-database:

http://hgdownload.cse.ucsc.edu/downloads.html#human

Another useful site

http://www.ncbi.nlm.nih.gov/projects/genome/assembly/grc/human/index.shtml

was mentioned by @Neilfws in this post:

A: Shorter Sequences In The Human Genomic Dna Download From Ucsc Genomic Browser We

Answer 1

[mastal511]

Data from the 1000 genomes project in the ENA.

[GenoMax]

Do you know if data is available assembled (which is what OP is asking)?

[mastal511]

Good point. Probably not.

Answer 2

[WouterDeCoster]

I wonder what you exactly want to get out of this, just a fastafile with variant alleles? What with heterozygous positions? Guess what you are looking for is not readily available, so I wonder about your biological question.

[ahm3dhany]

some operations related to SNPs (genotype to phenotype for example).