Where to download complete Genbank file?
1
0
Entering edit mode
8.6 years ago
jolespin ▴ 150

I want to download the Genbank file of Anabaena variabilis. It's on NCBI http://www.ncbi.nlm.nih.gov/assembly/276508

This organism has:

(i) a chromosome; (ii) 3 plasmids; and (iii) a non-nuclear incision element.

I can download all of these individually but is there a place where ALL of these (or at least the chromosome and plasmids) are within a single Genbank file? It would be nice if the sequence was on there but if not, it's ok I mainly need the features.

Right now, I have to download them individually, put them in a directory, then bash cat * > complete.gbk

There is a Download the full sequence report but that's not what I need.

genbank genome gene • 3.2k views
ADD COMMENT
1
Entering edit mode
8.6 years ago
GenoMax 147k

You can get the full genome in GenBank format here.

$ grep LOCUS GCA_000204075.1_ASM20407v1_genomic.gbff 
LOCUS       CP000117             6365727 bp    DNA     circular BCT 28-JAN-2014
LOCUS       CP000119              366354 bp    DNA     circular BCT 28-JAN-2014
LOCUS       CP000120               35762 bp    DNA     circular BCT 28-JAN-2014
LOCUS       CP000121              300758 bp    DNA     circular BCT 28-JAN-2014
LOCUS       CP000118               37151 bp    DNA     linear   BCT 28-JAN-2014
ADD COMMENT

Login before adding your answer.

Traffic: 1599 users visited in the last hour
Help About
FAQ
Access RSS
API
Stats

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.

Powered by the version 2.3.6