Syntenic loci between species

Question

[hellbio]

Dear all,

Could someone suggest how to find syntenic loci between species. I would like to find the syntenic regions for human-dog. could this be achieved by the lift-over conversion of human to dog genomic coordinates ?

Answer 1

[mastal511]

The Cynteny server might help, it seems to have both human and dog in the list of species. See

http://cinteny.cchmc.org/

[hellbio]

Could you let me know how is lifting over genomic ccordinates between two species different from syntenic loci?

Answer 2

[mastal511]

This previous discussion about synteny on biostars includes links on how to get synteny information from Ensembl:

How to find synteny between genes and Chromosomes?

[hellbio]

the link in ensmbl is limited for a user specified synteny loci. Is there any option to find across the whole genome between 2 species?