Memory and Runtime Cufflinks
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8.5 years ago
debitboro ▴ 270

Hi Everyone,

I would like to run cufflinks on my generated .bam file from tophat2, but I don't know the amount of RAM to use, and the time that such program takes to finish. I have a .bam file of 4 giga.

Help/Advice ?
cufflinks runtime tophat2 • 2.4k views
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Since you work on a cluster start with 10G. If that fails increase the allocation. Cufflinks should not take as long to run as the alignments.

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