mapping parental RNA

Question

[Brian Lam]

We have an RNAseq experiment where we sequenced early offsprings from Mus Musculus Domesticus and Mus Musculus Castanuos cross and I was wondering if anyone has any experience analysing similar experiments and how I can tell which transcript is from which parent?

Thanks in advance.

Answer 1

[russell]

This paper seems a good place to start http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4564992/