Entering edit mode
8.6 years ago
Shab86
▴
310
Hi all,
I am trying to use i-stats command in plinkseq and in the output text file i get this at the end:
plinkseq warning: problem converting . (repeated 100718 times)
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plinkseq warning: undefined FILTER field (absent in VCF header) : LowQual
plinkseq warning: undefined FILTER field (absent in VCF header) : VQSRTrancheINDEL99.00to99.90
plinkseq warning: undefined FILTER field (absent in VCF header) : VQSRTrancheSNP99.90to100.00
plinkseq warning: undefined FILTER field (absent in VCF header) : VQSRTrancheINDEL99.90to100.00
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
Can anybody help me understand these warnings?