where I can download mapped result of SRA files

Question

[bxia]

Is there download link for mapped result (bam, sam of SRA files?

Thanks, it takes too long time for mapping...

[Chris Fields]

SRA and dbGaP both allow FASTQ and BAM, but the latter's availability is dependent on whether it was deposited with the data (this should be apparent from the SRA record). Unfortunately most analyses I have seen deposit FASTQ, and you would need to re-align the seq data on your own dime.

Answer 1

[Shicheng Guo]

No. GEO, SRA and Arrayexpress, All these database only save fastq files.

[bxia]

Do you know what common database save analyzed data?

[Chris Fields]

Not many; the key requirement is that researchers make data available but this can be in many forms, and the easiest to deposit is typically raw data