Fusion Gene prediction for Color Space data

Question

[nikkihathi]

Hello!

Could anyone suggest a bioinformatics tools which is useful to predict fusion genes for color space data?

Thanks!

[natasha.sernova]

See these posts:

what is difference of color space and base space data ?

how to understand gene fusion and how to call gene fusion ?

What Does Color Space And Nucleotide Space Mean (Data, Reference Genome Etc.) ?

Gap Alignment For Color Space Data (Blat For Color Space!)

Tools description:

See these papers:

Pegasus: a comprehensive annotation and prediction tool for detection of driver gene fusions in cancer, 2014

Pegasus

Exploration of the gene fusion landscape of glioblastoma using transcriptome sequencing and copy number data, 2013

glioblastoma

RNA-Seq Mapping and Detection of Gene Fusions with a Suffix Array Algorithm, 2012

Suffix_array

2011: one_more_old_tool description with steps to proceed

[nikkihathi]

thanks! @natasha.sernova