Question

how to find a micro RNA in a mature RNA?

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8.5 years ago

Learner ▴ 280

Hello,

I am wondering if there is any algorithm, program, tutorial that shows how to find a micro RNA from a mature RNA? if so, can you please let me know ?

RNA-Seq • 1.6k views

ADD COMMENT • link updated 8.5 years ago by andrew.j.skelton73 6.6k • written 8.5 years ago by Learner ▴ 280

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Do you mean to predict the mature miRNA from premiRNA?

ADD REPLY • link 8.5 years ago by Sandeep ▴ 260

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I don't but perhaps DIANA-TarBase could help you out?

ADD REPLY • link 8.5 years ago by Denise CS ★ 5.2k

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@Denise - Open Targets Thanks, yes that website helps but still fuzzy. I am still searching to find a way for it . is there a way that check for similarity between all unregulated microRNAs in for example a specific cancer? is it logical to check for conservative regions among them too ?

ADD REPLY • link 8.5 years ago by Learner ▴ 280

score 0 · Answer 1 · 2016-06-10

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8.5 years ago

andrew.j.skelton73 6.6k

Can you not just align or quantify against the miRBase mature sequence database, for your given organism?

ADD COMMENT • link 8.5 years ago by andrew.j.skelton73 6.6k