Problem In running Modeller for Homology Modelling of Protein

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8.5 years ago

Vinay Singh ▴ 50

Hello Everyone,

I am Running Modeller for Homology Modelling of Protein but Getting error and not able to resolve the problem please help to sort out this error.

1. mod9.16 model_default.py                   
Could not find platform independent libraries <prefix>
Could not find platform dependent libraries <exec_prefix>
Consider setting $PYTHONHOME to <prefix>[:<exec_prefix>]
'import site' failed; use -v for traceback
FATAL ERROR: Cannot open file model_default.py: No such file or directory

But the model_default.py file is their in my system.

MODELLER HOMOLOGY MODELLING Protein Modelling • 2.1k views

ADD COMMENT • link updated 8.3 years ago by Biostar 20 • written 8.5 years ago by Vinay Singh ▴ 50

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Have you tried to run your original command with -v option as the error suggests? Before you tackle the model_default.py problem there are (potentially) missing libraries to take care of first (which may be fixed by setting $PYTHON_HOME).

ADD REPLY • link 8.5 years ago by GenoMax 147k

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Is the model_default.py script in the same folder from which you invoke mod9.16? How did you install modeller?

ADD REPLY • link 8.5 years ago by Felix_Sim ▴ 260

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