List of Indirectly binding transcription factors
1
0
Entering edit mode
8.5 years ago
Kurui • 0

Does anyone know where I can find or have a curated list of human transcription factors known to bind indirectly or cooperatively?

ChIP-Seq Transcription factors • 1.6k views
ADD COMMENT
0
Entering edit mode
8.5 years ago
Denise CS ★ 5.2k

Check JASPAR and its publication. They seem to have some cases of multiple binding profiles for a given TF. You can view these CRMs in Ensembl too, as a result of the Ensembl Regulatory Build. Find out the TFs used to annotate a CTCF binding site (for example) on human chromosome 17 in the Region in detail view in the Ensembl browser.

ADD COMMENT
0
Entering edit mode

Thank you for your answer. That is a very useful tool, and will be using it to explore further. I am actually looking for a list of TFs (e.g. TBP) that are known to bind indirectly to sequence via other TFs. This information can be obtained from various published papers, but I was just wondering if there is a curated list available.

ADD REPLY

Login before adding your answer.

Traffic: 1850 users visited in the last hour
Help About
FAQ
Access RSS
API
Stats

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.

Powered by the version 2.3.6