How to use SNPtest and QCtool

Question

[yjxzxq]

Dear, I just received the imputed data which include the info, info by samples, haps, allele probes and main output. I am a newer of GWAS, I know I should use the QCtool and snptest to do the association. Do any could give me some advise how to do by QCtool and snptest. by the way, the data are gz compressed, Do I need to extract them before analysis. If extracted, I file would be exposed. Best regards. Jason

[ccolmenares]

Hi! I'm just wondering, could you figured it out how to use SNPtest? I 'm trying to use it as well. Let me know, Thanks!