Empty VCF file returned by ANNOVAR on Galaxy

Question

[arvand.akbari]

Hi,

I have a VCF file which I need to annotate through ANNOVAR. But when I use the ANNOVAR tab provided by galaxy the result is a completely empty VCF file. Can someone please explain why this happens and what I should do?

P.S: I am not familiar with linux so I cannot use ANNOVAR directly,. Thus, I have to use it through galaxy.

Arvand

[Devon Ryan]

Please ask this on the Galaxy support site.

Answer 1

[Jennifer Hillman Jackson]

Reply https://biostar.usegalaxy.org/p/18107/