Hi all,
I have the following table(s) (showing a part here), where the position of aminoacid is shown in column 1 and the type (1 for lcr, -1 for disorder) is shown in column 2:
#AA Type
6 1
10 1
11 1
14 -1
15 -1
I would like your opinions on how to visualize this kind of data. Each table is for a single protein. My idea is to create something like a plot, showing the protein length, both the LCR and disorder regions, and also the consensus. My tables are very large in size and I would prefer the process to be done using a script. Can this be done in R? If yes any suggestions on how to do this? If not, what's the most efficient way of doing it?
Edit: a linear overview is preferred! (shown below) IMAGE Thanks
Thanks, I'll check it out. Although I prefer a linear overview like:
Dear,
Sure try both representations and choose what fits you best. If your focus will be on the amino acid composition/mutations and residue based features a circular representation will fit more since it makes better use of space.
However if you want to compare domains between different proteins a rectangular view with windows can be more useful.
Good luck!