question about mast of meme suite

Question

[kws15]

Hi everyone,

so i have a question about mast of meme suite, i have tried running mast on a pair of orthologous gene promoter using a very large motif database file. I noticed that the result from it is different from just running meme on this pair of promoters. (different motifs detected in which meme detect de novo motifs) However, the output of mast allows me to see the alignment clearly with highlighted motifs and different nucleotide differences. i am just wondering how can i use the motif detected in meme for mast? Or is there anyway that i can see this clear for meme result too? i know they kind of also have the alignment from the output of meme, but what i want is to see every single base. Many thanks