how is 1000g vcf generated ? call variants through all samples together or seperatly ?

Question

[kdjteda]

how is 1000g vcf generated ? call variants through all samples or seperatly then merge them ?

Answer 1

[Jorge Amigo]

the quick answer would be multi-sample calling.

have you tried browsing the 1000g web site? you may want to start by looking at http://www.1000genomes.org/analysis, but further reading from http://www.1000genomes.org/1000-genomes-project-publications would be advisable.

[kdjteda]

Thanks for your answer.

Answer 2

[Emily]

Please do not post identical questions to BioStars and the 1000 Genomes helpdesk.